Transcript: ENST00000507766.1 PDS5A-004

Description

PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:29088]

Gene Synonyms

KIAA0648, PDS5, PIG54, SCC-112, SCC112

Location

Chromosome 4: 39,838,632-39,850,181 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 5406 variant alleles and maps to 153 oligo probes.

Gene

This transcript is a product of gene ENSG00000121892.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303538.8	PDS5A-001	7176	1337aa	ENSP00000303427.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47045	B3KMN2 G1UI16 Q29RF7 Q96DB6	NM_001100399.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503396.1	PDS5A-003	2685	600aa	ENSP00000426749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54759	Q29RF7	NM_001100400.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513798.1	PDS5A-006	494	165aa	ENSP00000424531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000507020.1	PDS5A-009	781	126aa	ENSP00000424510.1	Nonsense mediated decay		H0Y9L6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512643.1	PDS5A-007	581	43aa	ENSP00000425386.1	Nonsense mediated decay		H0Y9X6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507766.1	PDS5A-004	4196	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503867.1	PDS5A-008	640	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506262.1	PDS5A-005	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503696.1	PDS5A-011	465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508625.1	PDS5A-010	351	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 4,196 bps,

Version

ENST00000507766.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361290 (version 1)

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Transcript: ENST00000507766.1 PDS5A-004

Summary