Transcript: ENST00000430881.1 TNFSF10-007

Description

tumor necrosis factor (ligand) superfamily, member 10 [Source:HGNC Symbol;Acc:11925]

Gene Synonyms

APO2L, Apo-2L, CD253, TL2, TRAIL

Location

Chromosome 3: 172,225,074-172,241,100 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 6897 variant alleles and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSG00000121858.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000241261.2	TNFSF10-001	1953	281aa	ENSP00000241261.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3219	P50591 Q6IBA9	NM_003810.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420541.2	TNFSF10-002	1619	101aa	ENSP00000389931.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54680	P50591 Q6JSD9	NM_001190942.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430881.1	TNFSF10-007	467	74aa	ENSP00000404008.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466777.1	TNFSF10-004	1326	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494851.1	TNFSF10-006	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472804.1	TNFSF10-005	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 467 bps, Translation length: 74 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000430881.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000346607 (version 1)

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Transcript: ENST00000430881.1 TNFSF10-007

Summary