Transcript: ENST00000443213.1 SRSF7-003

Description

serine/arginine-rich splicing factor 7 [Source:HGNC Symbol;Acc:10789]

Gene Synonyms

9G8, AAG3, HSSG1, RBM37, SFRS7, ZCCHC20, ZCRB2

Location

Chromosome 2: 38,972,060-38,978,494 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features, is associated with 3669 variant alleles and maps to 688 oligo probes.

Gene

This transcript is a product of gene ENSG00000115875.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000313117.6	SRSF7-001	2489	238aa	ENSP00000325905.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33183	Q16629	NM_001195446.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446327.2	SRSF7-201	1169	226aa	ENSP00000402264.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56115	Q16629	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409276.1	SRSF7-012	1050	235aa	ENSP00000386806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAB2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452806.1	SRSF7-007	747	110aa	ENSP00000392300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000425778.1	SRSF7-002	2857	137aa	ENSP00000400246.1	Nonsense mediated decay		-	-	-
ENST00000425941.2	SRSF7-010	1944	137aa	ENSP00000416516.2	Nonsense mediated decay		-	-	-
ENST00000443213.1	SRSF7-003	1903	132aa	ENSP00000402544.1	Nonsense mediated decay		Q16629	-	-
ENST00000431066.1	SRSF7-011	1847	132aa	ENSP00000398159.1	Nonsense mediated decay		Q16629	-	-
ENST00000415527.1	SRSF7-004	1135	51aa	ENSP00000408868.1	Nonsense mediated decay		F8WEA1	-	-
ENST00000432873.1	SRSF7-008	603	70aa	ENSP00000401202.1	Nonsense mediated decay		H7C1N1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477635.1	SRSF7-005	680	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487773.1	SRSF7-009	637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 1,903 bps, Translation length: 132 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16629

Version

ENST00000443213.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331252 (version 1)

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Transcript: ENST00000443213.1 SRSF7-003

Summary