Transcript: ENST00000513318.1 HMGXB3-003

Description

HMG box domain containing 3 [Source:HGNC Symbol;Acc:28982]

Gene Synonyms

HMGX3, KIAA0194, SMF

Location

Chromosome 5: 149,409,880-149,420,386 forward strand.

About this transcript

This transcript has 3 exons, is associated with 4131 variant alleles and maps to 80 oligo probes.

Gene

This transcript is a product of gene ENSG00000113716.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000502717.1	HMGXB3-001	4974	1292aa	ENSP00000421917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54935	Q12766 Q6P442	NM_014983.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503427.1	HMGXB3-002	5275	1260aa	ENSP00000422231.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEK0 Q6P442	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514469.1	HMGXB3-004	975	112aa	ENSP00000426631.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000513318.1	HMGXB3-003	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510472.1	HMGXB3-005	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 749 bps,

Version

ENST00000513318.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373773 (version 1)

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Transcript: ENST00000513318.1 HMGXB3-003

Summary