Transcript: ENST00000229214.4 KRR1-001

Description

KRR1, small subunit (SSU) processome component, homolog (yeast) [Source:HGNC Symbol;Acc:5176]

Gene Synonyms

HRB2, RIP-1

Location

About this transcript

This transcript has 10 exons, is annotated with 11 domains and features, is associated with 6988 variant alleles and maps to 695 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229214.4	KRR1-001	4075	381aa	ENSP00000229214.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9012	Q13601	NM_007043.6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438169.2	KRR1-003	975	324aa	ENSP00000411740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13601	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550023.1	KRR1-002	855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550898.1	KRR1-004	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551070.1	KRR1-005	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 4,075 bps, Translation length: 381 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13601

CCDS

This transcript is a member of the Human CCDS set: CCDS9012

Version

ENST00000229214.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000405727 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.