Transcript: ENST00000539434.1 CAND1-006

Description

cullin-associated and neddylation-dissociated 1 [Source:HGNC Symbol;Acc:30688]

Gene Synonyms

DKFZp434M1414, KIAA0829, TIP120, TIP120A

Location

Chromosome 12: 67,663,506-67,686,969 forward strand.

About this transcript

This transcript has 3 exons, is associated with 10010 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSG00000111530.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000545606.1	CAND1-001	11251	1230aa	ENSP00000442318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8977	B3KMG3 F5H6I6 Q86VP6	NM_018448.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544619.1	CAND1-003	4091	770aa	ENSP00000444089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KMG3 Q86VP6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540525.1	CAND1-007	527	54aa	ENSP00000437594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6I6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540319.1	CAND1-002	2786	442aa	ENSP00000445794.1	Nonsense mediated decay		H0YH27	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000539109.1	CAND1-009	433	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000539434.1	CAND1-006	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541058.1	CAND1-005	663	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535146.1	CAND1-008	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 772 bps,

Version

ENST00000539434.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000402108 (version 1)

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Transcript: ENST00000539434.1 CAND1-006

Summary