Transcript: ENST00000549417.1 LIN7A-003

Description

lin-7 homolog A (C. elegans) [Source:HGNC Symbol;Acc:17787]

Gene Synonyms

LIN-7A, LIN7, MALS-1, MALS1, TIP-33, VELI1

Location

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 41680 variant alleles and maps to 147 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000552864.1	LIN7A-001	6112	233aa	ENSP00000447488.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9021	O14910	NM_004664.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549417.1	LIN7A-003	905	180aa	ENSP00000448975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YIA8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552093.1	LIN7A-004	546	130aa	ENSP00000448891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000261203.3	LIN7A-002	989	101aa	ENSP00000261203.3	Nonsense mediated decay		J3KN23	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 905 bps, Translation length: 180 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000549417.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000407762 (version 1)