Transcript: ENST00000353383.1 RAI1-001

Description

retinoic acid induced 1 [Source:HGNC Symbol;Acc:9834]

Gene Synonyms

DKFZP434A139, KIAA1820, MGC12824, SMCR, SMS

Location

Chromosome 17: 17,584,787-17,714,767 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 21 domains and features, is associated with 61913 variant alleles and maps to 642 oligo probes.

Gene

This transcript is a product of gene ENSG00000108557.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000353383.1	RAI1-001	7662	1906aa	ENSP00000323074.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11188	A8MXE8 J3QLL5 Q7Z5J4	NM_030665.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261641.6	RAI1-201	4923	1640aa	ENSP00000261641.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MXE8 E7EVZ3 J3QLL5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395774.1	RAI1-002	2928	942aa	ENSP00000379120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MXE8 J3QLL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471135.2	RAI1-006	570	65aa	ENSP00000463607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000583166.1	RAI1-008	489	156aa	ENSP00000463984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489697.1	RAI1-004	1570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582514.1	RAI1-009	878	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 7,662 bps, Translation length: 1,906 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z5J4

CCDS

This transcript is a member of the Human CCDS set: CCDS11188

Version

ENST00000353383.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000131775 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000353383.1 RAI1-001

Summary