Transcript: ENST00000581003.1 CBX1-006

Description

chromobox homolog 1 [Source:HGNC Symbol;Acc:1551]

Gene Synonyms

CBX, HP1-BETA, HP1Hs-beta, HP1Hsbeta, M31, MOD1, p25beta

Location

Chromosome 17: 46,148,834-46,178,741 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 19 domains and features, is associated with 14693 variant alleles and maps to 208 oligo probes.

Gene

This transcript is a product of gene ENSG00000108468.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393408.3	CBX1-002	2422	185aa	ENSP00000377060.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11525	C9JWS9 J3KS05 K7ELA4 P83916 Q6IBN6	NM_006807.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225603.4	CBX1-001	2232	185aa	ENSP00000225603.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11525	C9JWS9 J3KS05 K7ELA4 P83916 Q6IBN6	NM_001127228.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581003.1	CBX1-006	812	173aa	ENSP00000462242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWS9 J3KS05 K7ELA4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000402583.1	CBX1-004	578	168aa	ENSP00000385413.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MD17	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000495350.1	CBX1-005	550	138aa	ENSP00000465985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWS9 K7ELA4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444685.1	CBX1-003	544	110aa	ENSP00000393179.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWS9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 812 bps, Translation length: 173 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000581003.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000443416 (version 1)

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Transcript: ENST00000581003.1 CBX1-006

Summary