Transcript: ENST00000472196.1 SORCS1-005

Description

sortilin-related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:16697]

Gene Synonyms

SORCS, hSorCS, sorCS1

Location

Chromosome 10: 108,426,842-108,434,847 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 3814 variant alleles and maps to 96 oligo probes.

Gene

This transcript is a product of gene ENSG00000108018.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000344440.6	SORCS1-201	3612	1198aa	ENSP00000345964.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31283	B3KVZ0 Q8WY21	NM_001206572.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263054.6	SORCS1-001	7272	1168aa	ENSP00000263054.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7559	Q8WY21	NM_052918.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369698.1	SORCS1-002	2638	714aa	ENSP00000358712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452214.1	SORCS1-004	663	213aa	ENSP00000407769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478809.2	SORCS1-007	826	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472196.1	SORCS1-005	629	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473866.1	SORCS1-003	2313	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486192.1	SORCS1-006	632	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 629 bps,

Version

ENST00000472196.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000050236 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000472196.1 SORCS1-005

Summary