Transcript: ENST00000355044.3 ATRNL1-001

Description

attractin-like 1 [Source:HGNC Symbol;Acc:29063]

Gene Synonyms

ALP, FLJ45344, KIAA0534, bA338L11.1, bA454H24.1

Location

Chromosome 10: 116,853,384-117,708,503 forward strand.

About this transcript

This transcript has 29 exons, is annotated with 48 domains and features, is associated with 372556 variant alleles and maps to 1004 oligo probes.

Gene

This transcript is a product of gene ENSG00000107518.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355044.3	ATRNL1-001	8479	1379aa	ENSP00000347152.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7592	Q5VV63	NM_207303.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423111.2	ATRNL1-202	1646	430aa	ENSP00000409624.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DH41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527407.1	ATRNL1-005	1583	398aa	ENSP00000473412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GMZ1	NM_001276282.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000303745.7	ATRNL1-201	1330	172aa	ENSP00000307660.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MD97	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526946.1	ATRNL1-009	932	252aa	ENSP00000431423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL90	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526373.1	ATRNL1-010	648	216aa	ENSP00000434118.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000529665.1	ATRNL1-002	1816	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485327.2	ATRNL1-003	1699	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000424738.1	ATRNL1-004	768	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534530.1	ATRNL1-011	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000449616.2	ATRNL1-007	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524503.1	ATRNL1-008	311	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 8,479 bps, Translation length: 1,379 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VV63

CCDS

This transcript is a member of the Human CCDS set: CCDS7592

Version

ENST00000355044.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000050507 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000355044.3 ATRNL1-001

Summary