Transcript: ENST00000496910.1 EXOSC3-006

Description

exosome component 3 [Source:HGNC Symbol;Acc:17944]

Gene Synonyms

CGI-102, PCH1B, RP11-3J10.8, RRP40, Rrp40p, bA3J10.7, hRrp-40, hRrp40p, p10

Location

Chromosome 9: 37,783,869-37,784,742 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 473 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSG00000107371.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000327304.5	EXOSC3-001	1806	275aa	ENSP00000323046.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35016	Q9NQT5	NM_016042.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396521.3	EXOSC3-002	768	164aa	ENSP00000379775.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43805	Q9NQT5 Q9NYS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000465229.1	EXOSC3-005	1625	164aa	ENSP00000418422.1	Nonsense mediated decay	CCDS43805	Q9NQT5 Q9NYS3	-	-
ENST00000490516.1	EXOSC3-004	773	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489414.1	EXOSC3-009	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482614.1	EXOSC3-008	462	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465860.1	EXOSC3-007	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496910.1	EXOSC3-006	217	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 217 bps,

Version

ENST00000496910.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000355706 (version 1)

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Transcript: ENST00000496910.1 EXOSC3-006

Summary