Transcript: ENST00000485672.1 ATP1A3-003

Description

ATPase, Na+/K+ transporting, alpha 3 polypeptide [Source:HGNC Symbol;Acc:801]

Gene Synonyms

AHC2, DYT12, RDP

Location

Chromosome 19: 42,488,413-42,489,494 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 560 variant alleles and maps to 54 oligo probes.

Gene

This transcript is a product of gene ENSG00000105409.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000545399.1	ATP1A3-008	3588	1026aa	ENSP00000444688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58664	M0QXF2 M0R116 P13637 Q58I21	NM_001256214.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302102.5	ATP1A3-001	3548	1013aa	ENSP00000302397.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12594	M0QXF2 M0R116 P13637 Q58I21	NM_152296.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543770.1	ATP1A3-007	3427	1024aa	ENSP00000437577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58663	M0QXF2 M0R116 P13637 Q58I21	NM_001256213.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602133.1	ATP1A3-005	3260	983aa	ENSP00000471581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXF2 M0R116 Q58I21	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473086.2	ATP1A3-011	669	178aa	ENSP00000469129.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXF2 Q58I21	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441343.1	ATP1A3-002	3818	1226aa	ENSP00000411503.1	Non stop decay		M0QXF2 Q58I21	-	-
ENST00000468774.2	ATP1A3-006	530	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465007.1	ATP1A3-009	255	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485672.1	ATP1A3-003	963	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 963 bps,

Version

ENST00000485672.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000268109 (version 1)

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Transcript: ENST00000485672.1 ATP1A3-003

Summary