Transcript: ENST00000559327.1 IGDCC4-002

Description

immunoglobulin superfamily, DCC subclass, member 4 [Source:HGNC Symbol;Acc:13770]

Gene Synonyms

DDM36, KIAA1628, LOC57722, NOPE

Location

Chromosome 15: 65,673,825-65,688,767 reverse strand.

About this transcript

This transcript has 14 exons, is associated with 7176 variant alleles and maps to 415 oligo probes.

Gene

This transcript is a product of gene ENSG00000103742.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000352385.2	IGDCC4-001	6508	1250aa	ENSP00000319623.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10206	Q8TDY8	NM_020962.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558048.1	IGDCC4-003	3407	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559327.1	IGDCC4-002	5544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558819.1	IGDCC4-005	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560319.1	IGDCC4-006	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561309.1	IGDCC4-004	469	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 0, Transcript length: 5,544 bps,

Version

ENST00000559327.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418481 (version 2)

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Transcript: ENST00000559327.1 IGDCC4-002

Summary