Transcript: ENST00000566977.1 CAPN15-008

Description

calpain 15 [Source:HGNC Symbol;Acc:11182]

Gene Synonyms

SOLH

Location

Chromosome 16: 602,755-604,636 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 1474 variant alleles and maps to 77 oligo probes.

Gene

This transcript is a product of gene ENSG00000103326.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000219611.2	CAPN15-001	4744	1086aa	ENSP00000219611.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10410	H3BR03 O75808	NM_005632.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562370.1	CAPN15-005	942	184aa	ENSP00000456017.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BR03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568988.1	CAPN15-006	911	112aa	ENSP00000457030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BT55	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566977.1	CAPN15-008	279	71aa	ENSP00000457306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000567216.1	CAPN15-003	3174	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568402.1	CAPN15-007	540	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565010.1	CAPN15-004	1952	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 279 bps, Translation length: 71 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000566977.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420519 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000566977.1 CAPN15-008

Summary