Transcript: ENST00000481035.1 CACNA1F-004

Description

calcium channel, voltage-dependent, L type, alpha 1F subunit [Source:HGNC Symbol;Acc:1393]

Gene Synonyms

AIED, CACNAF1, COD3, COD4, CORDX, CORDX3, CSNB2, CSNB2A, CSNBX2, Cav1.4, Cav1.4alpha1, JM8, JMC8, OA2

Location

Chromosome X: 49,066,121-49,067,459 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 508 variant alleles and maps to 169 oligo probes.

Gene

This transcript is a product of gene ENSG00000102001.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376265.2	CACNA1F-007	6070	1977aa	ENSP00000365441.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35253	O60840	NM_005183.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323022.5	CACNA1F-001	6037	1966aa	ENSP00000321618.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59167	F5CIQ9 O60840	NM_001256789.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376251.1	CACNA1F-002	5813	1912aa	ENSP00000365427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59166	O60840	NM_001256790.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486943.1	CACNA1F-005	662	116aa	ENSP00000418961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C549	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480889.1	CACNA1F-006	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481035.1	CACNA1F-004	714	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 714 bps,

Version

ENST00000481035.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000081207 (version 1)

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Transcript: ENST00000481035.1 CACNA1F-004

Summary