Transcript: ENST00000487738.1 ISM2-007

Description

isthmin 2 [Source:HGNC Symbol;Acc:23176]

Gene Synonyms

FLJ32147, TAIL1, THSD3

Location

Chromosome 14: 77,942,183-77,949,242 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 3247 variant alleles and maps to 207 oligo probes.

Gene

This transcript is a product of gene ENSG00000100593.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000342219.4	ISM2-001	2971	571aa	ENSP00000341490.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9864	G3XAI3 Q6H9L7	NM_199296.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393684.3	ISM2-201	3042	483aa	ENSP00000377289.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3XAI3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412904.1	ISM2-202	2745	490aa	ENSP00000416773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2Q2 Q6H9L7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429906.1	ISM2-203	2745	490aa	ENSP00000395387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6H9L7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493585.1	ISM2-003	1739	292aa	ENSP00000420452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45143	Q6H9L7	NM_182509.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554801.2	ISM2-008	579	185aa	ENSP00000450791.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2Q2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000216481.6	ISM2-002	3042	76aa	ENSP00000216481.6	Nonsense mediated decay		Q6H9L7	-	-
ENST00000480979.1	ISM2-004	944	104aa	ENSP00000419434.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471734.1	ISM2-006	913	73aa	ENSP00000417679.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000472744.1	ISM2-005	1137	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487738.1	ISM2-007	1076	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,076 bps,

Version

ENST00000487738.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000351315 (version 1)

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Transcript: ENST00000487738.1 ISM2-007

Summary