Transcript: ENST00000553619.1 VTI1B-004

Description

vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:17793]

Gene Synonyms

VTI1, VTI1-LIKE, VTI1L, VTI1L1, VTI2, v-SNARE, vti1-rp1

Location

About this transcript

This transcript has 2 exons, is associated with 1703 variant alleles and maps to 125 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000554659.1	VTI1B-001	5351	232aa	ENSP00000450731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9786	Q9UEU0	NM_006370.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556461.1	VTI1B-005	576	103aa	ENSP00000451759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554636.1	VTI1B-006	565	128aa	ENSP00000451661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000216456.6	VTI1B-002	1103	44aa	ENSP00000216456.6	Nonsense mediated decay		J3KMW2	-	-
ENST00000555543.1	VTI1B-003	718	59aa	ENSP00000452366.1	Nonsense mediated decay		G3V5I2	-	-
ENST00000553619.1	VTI1B-004	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 574 bps,

Version

ENST00000553619.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412657 (version 1)