Transcript: ENST00000487103.1 HIVEP1-005

Description

human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:4920]

Gene Synonyms

CIRIP, CRYBP1, MBP-1, PRDII-BF1, Schnurri-1, ZAS1, ZNF40, ZNF40A

Location

Chromosome 6: 12,012,233-12,120,455 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 47555 variant alleles and maps to 131 oligo probes.

Gene

This transcript is a product of gene ENSG00000095951.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379388.2	HIVEP1-001	9027	2718aa	ENSP00000368698.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43426	C9J2N3 C9JAW2 C9JZF8 P15822	NM_002114.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541134.1	HIVEP1-201	2085	583aa	ENSP00000445617.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H212	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484210.1	HIVEP1-007	1602	47aa	ENSP00000419721.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZV1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442081.2	HIVEP1-002	1044	240aa	ENSP00000409078.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JLG1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000487103.1	HIVEP1-005	585	142aa	ENSP00000417348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2N3 C9JAW2 C9JZF8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000491710.1	HIVEP1-004	579	120aa	ENSP00000419762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZF8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478545.1	HIVEP1-006	576	128aa	ENSP00000418021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAW2 C9JZF8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000399469.2	HIVEP1-003	2085	43aa	ENSP00000382395.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 585 bps, Translation length: 142 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000487103.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000353829 (version 1)

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Transcript: ENST00000487103.1 HIVEP1-005

Summary