Transcript: ENST00000300648.6 GCN1L1-001

Description

GCN1 general control of amino-acid synthesis 1-like 1 (yeast) [Source:HGNC Symbol;Acc:4199]

Gene Synonyms

GCN1, GCN1L, KIAA0219, PRIC295

Location

Chromosome 12: 120,565,007-120,632,513 reverse strand.

About this transcript

This transcript has 58 exons, is annotated with 38 domains and features, is associated with 32048 variant alleles and maps to 2037 oligo probes.

Gene

This transcript is a product of gene ENSG00000089154.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300648.6	GCN1L1-001	8675	2671aa	ENSP00000300648.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41847	B4DM32 Q92616	NM_006836.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550471.1	GCN1L1-003	918	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547369.1	GCN1L1-004	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551920.1	GCN1L1-005	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549815.1	GCN1L1-008	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548821.1	GCN1L1-009	504	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548132.1	GCN1L1-006	498	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547263.1	GCN1L1-007	366	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551549.1	GCN1L1-002	258	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 58, Coding exons: 58, Transcript length: 8,675 bps, Translation length: 2,671 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92616

CCDS

This transcript is a member of the Human CCDS set: CCDS41847

Version

ENST00000300648.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000403592 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000300648.6 GCN1L1-001

Summary