Transcript: ENST00000471404.1 GMCL1-003

Description

germ cell-less, spermatogenesis associated 1 [Source:HGNC Symbol;Acc:23843]

Gene Synonyms

BTBD13, FLJ13057, GCL, GCL1, SPATA29

Location

About this transcript

This transcript has 5 exons, is associated with 5145 variant alleles and maps to 128 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282570.3	GMCL1-001	4191	515aa	ENSP00000282570.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1895	Q53SE7 Q96IK5	NM_178439.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468386.2	GMCL1-002	808	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495047.1	GMCL1-004	478	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471404.1	GMCL1-003	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 842 bps,

Version

ENST00000471404.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000327367 (version 1)