Transcript: ENST00000216286.5 NID2-001

Description

nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:13389]

Gene Synonyms

NID-2

Location

Chromosome 14: 52,471,521-52,535,712 reverse strand.

About this transcript

This transcript has 22 exons, is annotated with 74 domains and features, is associated with 31961 variant alleles and maps to 764 oligo probes.

Gene

This transcript is a product of gene ENSG00000087303.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216286.5	NID2-001	4811	1375aa	ENSP00000216286.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9706	Q14112	NM_007361.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541773.1	NID2-201	4508	1274aa	ENSP00000443730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DPX8 Q14112	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556572.1	NID2-004	1964	644aa	ENSP00000452190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DPX8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556686.1	NID2-008	1320	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554284.1	NID2-003	811	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553297.1	NID2-006	798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555310.1	NID2-007	727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557051.1	NID2-005	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 4,811 bps, Translation length: 1,375 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14112

CCDS

This transcript is a member of the Human CCDS set: CCDS9706

Version

ENST00000216286.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000276888 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000216286.5 NID2-001

Summary