Transcript: ENST00000425947.1 SEPHS1-004

Description

selenophosphate synthetase 1 [Source:HGNC Symbol;Acc:19685]

Gene Synonyms

SELD, SPS, SPS1

Location

Chromosome 10: 13,375,901-13,382,790 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 3377 variant alleles and maps to 94 oligo probes.

Gene

This transcript is a product of gene ENSG00000086475.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000327347.5	SEPHS1-001	3273	392aa	ENSP00000367893.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7098	P49903 Q5T5U6 Q5T5U7	NM_012247.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545675.1	SEPHS1-202	2689	324aa	ENSP00000441119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P49903 Q5T5U6 Q5T5U7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378614.4	SEPHS1-002	2387	321aa	ENSP00000367877.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55703	P49903 Q5T5U6 Q5T5U7	NM_001195604.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537130.1	SEPHS1-201	1569	325aa	ENSP00000442768.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55702	P49903 Q5T5U7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413411.1	SEPHS1-003	660	166aa	ENSP00000401732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T5U6 Q5T5U7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425947.1	SEPHS1-004	383	91aa	ENSP00000400418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T5U7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494329.1	SEPHS1-005	796	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 383 bps, Translation length: 91 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000425947.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000046859 (version 1)

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Transcript: ENST00000425947.1 SEPHS1-004

Summary