Transcript: ENST00000546538.1 CHERP-004

Description

calcium homeostasis endoplasmic reticulum protein [Source:HGNC Symbol;Acc:16930]

Gene Synonyms

DAN16, DAN26, ERPROT213-21, SCAF6, SRA1

Location

Chromosome 19: 16,642,795-16,653,020 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 5332 variant alleles and maps to 213 oligo probes.

Gene

This transcript is a product of gene ENSG00000085872.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000546361.2	CHERP-001	4173	916aa	ENSP00000439856.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42518	Q8IWX8	NM_006387.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000198939.6	CHERP-003	4084	927aa	ENSP00000198939.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QK89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544299.1	CHERP-005	1755	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546538.1	CHERP-004	1429	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551747.1	CHERP-006	886	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597261.1	CHERP-008	674	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000600432.1	CHERP-007	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,429 bps,

Version

ENST00000546538.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000403375 (version 1)

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Transcript: ENST00000546538.1 CHERP-004

Summary