Transcript: ENST00000505251.1 YTHDC1-003

Description

YTH domain containing 1 [Source:HGNC Symbol;Acc:30626]

Gene Synonyms

KIAA1966, YT521, YT521-B

Location

Chromosome 4: 69,203,484-69,204,130 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 326 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSG00000083896.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000344157.4	YTHDC1-001	6232	727aa	ENSP00000339245.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33992	J3KS01 Q96MU7	NM_001031732.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355665.3	YTHDC1-002	3244	709aa	ENSP00000347888.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3522	J3KS01 Q96MU7	NM_133370.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579690.1	YTHDC1-007	2983	735aa	ENSP00000463982.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KS01 J3QR07	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507529.1	YTHDC1-005	689	93aa	ENSP00000461990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000510746.1	YTHDC1-004	515	12aa	ENSP00000462186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505251.1	YTHDC1-003	265	37aa	ENSP00000462238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KS01	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506175.1	YTHDC1-006	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 265 bps, Translation length: 37 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000505251.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362078 (version 2)

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Transcript: ENST00000505251.1 YTHDC1-003

Summary