Transcript: ENST00000509927.1 FAT1-003

Description

FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:3595]

Gene Synonyms

CDHF7, CDHR8, FAT, ME5, hFat1

Location

Chromosome 4: 187,510,226-187,516,954 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 3526 variant alleles and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSG00000083857.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000441802.2	FAT1-001	14786	4588aa	ENSP00000406229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47177	D6RCE4 Q14517	NM_005245.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509647.1	FAT1-002	1852	488aa	ENSP00000423736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCE4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512772.1	FAT1-005	1305	368aa	ENSP00000424157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507105.1	FAT1-010	854	285aa	ENSP00000423801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000509927.1	FAT1-003	357	119aa	ENSP00000420869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8F5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000509537.1	FAT1-011	479	52aa	ENSP00000421003.1	Nonsense mediated decay		D6RHE6	-	-
ENST00000512347.1	FAT1-008	512	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507662.1	FAT1-009	428	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000500085.2	FAT1-004	2224	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503253.1	FAT1-007	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508035.1	FAT1-006	341	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 357 bps, Translation length: 119 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000509927.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000360211 (version 1)

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Transcript: ENST00000509927.1 FAT1-003

Summary