Transcript: ENST00000559658.1 CHRNA3-003

Description

cholinergic receptor, nicotinic, alpha 3 (neuronal) [Source:HGNC Symbol;Acc:1957]

Gene Synonyms

LNCR2, NACHRA3, PAOD2

Location

Chromosome 15: 78,885,394-78,913,205 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 28 domains and features, is associated with 14099 variant alleles and maps to 449 oligo probes.

Gene

This transcript is a product of gene ENSG00000080644.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326828.5	CHRNA3-001	3202	505aa	ENSP00000315602.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10305	B4DP53 P32297 Q6EWN2	NM_000743.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348639.3	CHRNA3-002	2030	489aa	ENSP00000267951.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53964	P32297	NM_001166694.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559080.1	CHRNA3-007	535	17aa	ENSP00000453993.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559658.1	CHRNA3-003	1889	505aa	ENSP00000452896.1	Nonsense mediated decay	CCDS10305	B4DP53 P32297 Q6EWN2	-	-
ENST00000559941.1	CHRNA3-006	592	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558903.1	CHRNA3-008	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559002.1	CHRNA3-004	333	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561128.1	CHRNA3-005	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 1,889 bps, Translation length: 505 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P32297

CCDS

This transcript is a member of the Human CCDS set: CCDS10305

Version

ENST00000559658.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418917 (version 1)

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Transcript: ENST00000559658.1 CHRNA3-003

Summary