Transcript: ENST00000567379.1 VPS9D1-005

Description

VPS9 domain containing 1 [Source:HGNC Symbol;Acc:13526]

Gene Synonyms

ATP-BL, ATPBL, C16orf7

Location

Chromosome 16: 89,777,767-89,779,448 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 1358 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSG00000075399.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389386.3	VPS9D1-002	2748	631aa	ENSP00000374037.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42220	H3BM58 Q9Y2B5	NM_004913.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561976.1	VPS9D1-001	2791	561aa	ENSP00000454244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM58	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565023.1	VPS9D1-007	775	232aa	ENSP00000455792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000563798.1	VPS9D1-003	459	52aa	ENSP00000454889.1	Nonsense mediated decay		H3BNK1	-	-
ENST00000565452.1	VPS9D1-006	178	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568691.1	VPS9D1-004	838	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567379.1	VPS9D1-005	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 694 bps,

Version

ENST00000567379.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000422511 (version 1)

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Transcript: ENST00000567379.1 VPS9D1-005

Summary