Transcript: ENST00000420047.1 SEMA3A-002

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A [Source:HGNC Symbol;Acc:10723]

Gene Synonyms

COLL1, HH16, Hsema-I, Hsema-III, SEMA1, SEMAD, SEMAIII, SEMAL, SemD, coll-1

Location

Chromosome 7: 83,739,792-83,824,477 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 36722 variant alleles and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSG00000075213.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265362.4	SEMA3A-001	8225	771aa	ENSP00000265362.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5599	C9J9C4 C9JD25 Q14563 Q75MQ2 Q86UJ2	NM_006080.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436949.1	SEMA3A-008	2550	771aa	ENSP00000415260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5599	C9J9C4 C9JD25 Q14563 Q75MQ2 Q86UJ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424555.1	SEMA3A-003	568	19aa	ENSP00000404800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD25	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420047.1	SEMA3A-002	553	149aa	ENSP00000391900.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9C4 C9JD25	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000448879.1	SEMA3A-005	534	37aa	ENSP00000402093.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD25 Q14563	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471474.1	SEMA3A-006	688	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490883.1	SEMA3A-007	237	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 553 bps, Translation length: 149 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000420047.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000336604 (version 2)

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Transcript: ENST00000420047.1 SEMA3A-002

Summary