Transcript: ENST00000510124.1 CDHR2-004

Description

cadherin-related family member 2 [Source:HGNC Symbol;Acc:18231]

Gene Synonyms

FLJ20124, FLJ20383, PC-LKC, PCDH24, PCLKC

Location

Chromosome 5: 175,970,542-175,995,768 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 11596 variant alleles and maps to 110 oligo probes.

Gene

This transcript is a product of gene ENSG00000074276.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000510636.1	CDHR2-001	4509	1310aa	ENSP00000424565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	NM_001171976.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261944.5	CDHR2-003	4068	1310aa	ENSP00000261944.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	NM_017675.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506348.1	CDHR2-002	4005	1310aa	ENSP00000421078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34297	Q9BYE9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510124.1	CDHR2-004	575	62aa	ENSP00000426838.1	Nonsense mediated decay		D6REJ3	-	-
ENST00000513031.1	CDHR2-005	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508085.1	CDHR2-006	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000416365.2	CDHR2-007	488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 575 bps, Translation length: 62 residues

Version

ENST00000510124.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000372204 (version 1)

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Transcript: ENST00000510124.1 CDHR2-004

Summary