Transcript: ENST00000477369.1 AFF4-007

Description

AF4/FMR2 family, member 4 [Source:HGNC Symbol;Acc:17869]

Gene Synonyms

AF5Q31, MCEF

Location

Chromosome 5: 132,233,975-132,263,254 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 13064 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000072364.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265343.5	AFF4-001	9552	1163aa	ENSP00000265343.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4164	C9JCE0 Q9UHB7	NM_014423.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378595.3	AFF4-004	3348	900aa	ENSP00000367858.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCE0 Q9UHB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421773.1	AFF4-009	541	148aa	ENSP00000395268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425658.1	AFF4-005	513	171aa	ENSP00000409069.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000491831.1	AFF4-002	1667	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478588.1	AFF4-008	897	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000378593.2	AFF4-006	430	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465484.1	AFF4-003	1729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477369.1	AFF4-007	728	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 728 bps,

Version

ENST00000477369.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000251009 (version 1)

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Transcript: ENST00000477369.1 AFF4-007

Summary