Transcript: ENST00000512247.1 LNX1-003

Description

ligand of numb-protein X 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:6657]

Gene Synonyms

LNX, MPDZ, PDZRN2

Location

Chromosome 4: 54,439,898-54,457,932 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 7305 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSG00000072201.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263925.7	LNX1-001	2953	728aa	ENSP00000263925.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47057	D6RAH9 D6RB76 Q8TBB1	NM_001126328.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000306888.2	LNX1-002	3757	632aa	ENSP00000302879.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3492	Q8TBB1	NM_032622.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513421.1	LNX1-006	1024	125aa	ENSP00000426445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAH9 D6RB76 Q8TBB1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510143.1	LNX1-007	731	99aa	ENSP00000421897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAH9 D6RB76	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512247.1	LNX1-003	603	90aa	ENSP00000424364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB76	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507168.1	LNX1-008	572	16aa	ENSP00000425135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504299.1	LNX1-004	556	6aa	ENSP00000423344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504605.1	LNX1-005	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511398.1	LNX1-010	622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 603 bps, Translation length: 90 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000512247.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361542 (version 1)

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Transcript: ENST00000512247.1 LNX1-003

Summary