Transcript: ENST00000263925.7 LNX1-001

Description

ligand of numb-protein X 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:6657]

Gene Synonyms

LNX, MPDZ, PDZRN2

Location

Chromosome 4: 54,326,623-54,457,783 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 29 domains and features, is associated with 56656 variant alleles and maps to 499 oligo probes.

Gene

This transcript is a product of gene ENSG00000072201.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263925.7	LNX1-001	2953	728aa	ENSP00000263925.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47057	D6RAH9 D6RB76 Q8TBB1	NM_001126328.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000306888.2	LNX1-002	3757	632aa	ENSP00000302879.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3492	Q8TBB1	NM_032622.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513421.1	LNX1-006	1024	125aa	ENSP00000426445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAH9 D6RB76 Q8TBB1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510143.1	LNX1-007	731	99aa	ENSP00000421897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAH9 D6RB76	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512247.1	LNX1-003	603	90aa	ENSP00000424364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB76	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507168.1	LNX1-008	572	16aa	ENSP00000425135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504299.1	LNX1-004	556	6aa	ENSP00000423344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504605.1	LNX1-005	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511398.1	LNX1-010	622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,953 bps, Translation length: 728 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TBB1

CCDS

This transcript is a member of the Human CCDS set: CCDS47057

Version

ENST00000263925.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000219934 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000263925.7 LNX1-001

Summary