Transcript: ENST00000593005.1 LPHN1-006

Description

latrophilin 1 [Source:HGNC Symbol;Acc:20973]

Gene Synonyms

CIRL1, CL1, KIAA0821, LEC2

Location

Chromosome 19: 14,261,981-14,263,651 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 1010 variant alleles and maps to 113 oligo probes.

Gene

This transcript is a product of gene ENSG00000072071.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340736.6	LPHN1-001	5658	1474aa	ENSP00000340688.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32928	O94910	NM_001008701.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361434.3	LPHN1-002	5610	1469aa	ENSP00000355328.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12307	O94910	NM_014921.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592164.1	LPHN1-005	791	264aa	ENSP00000465453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000593005.1	LPHN1-006	729	243aa	ENSP00000468197.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000589616.1	LPHN1-004	675	225aa	ENSP00000468711.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESH3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000591528.1	LPHN1-007	612	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588677.1	LPHN1-008	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590223.1	LPHN1-003	424	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 729 bps, Translation length: 243 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000593005.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000459712 (version 1)

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Transcript: ENST00000593005.1 LPHN1-006

Summary