Transcript: ENST00000454642.3 CDH19-003

Description

cadherin 19, type 2 [Source:HGNC Symbol;Acc:1758]

Gene Synonyms

CDH7, CDH7L2

Location

Chromosome 18: 64,199,576-64,239,408 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 30 domains and features, is associated with 18049 variant alleles and maps to 291 oligo probes.

Gene

This transcript is a product of gene ENSG00000071991.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262150.2	CDH19-001	6341	772aa	ENSP00000262150.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11994	F8VVI9 J3QS15 Q96KY9 Q9H159	NM_021153.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540086.1	CDH19-005	1963	490aa	ENSP00000439593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59325	F8VVI9 J3QS15 Q96KY9 Q9H159	NM_001271028.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454642.3	CDH19-003	1677	434aa	ENSP00000401998.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVI9 Q96KY9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580157.1	CDH19-006	590	66aa	ENSP00000464477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QS15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579658.1	CDH19-002	2588	541aa	ENSP00000463085.1	Nonsense mediated decay		F8VVI9 J3KTP3 J3QS15 Q96KY9	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,677 bps, Translation length: 434 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000454642.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442287 (version 1)

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Transcript: ENST00000454642.3 CDH19-003

Summary