Transcript: ENST00000555824.1 SEL1L-003

Description

sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:10717]

Gene Synonyms

IBD2, PRO1063, SEL1-LIKE, SEL1L1, TSA305

Location

Chromosome 14: 81,965,152-82,000,177 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 23 domains and features, is associated with 14994 variant alleles and maps to 220 oligo probes.

Gene

This transcript is a product of gene ENSG00000071537.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336735.4	SEL1L-001	7925	794aa	ENSP00000337053.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9876	Q9UBV2	NM_005065.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555824.1	SEL1L-003	1631	301aa	ENSP00000450709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58333	Q9UBV2	NM_001244984.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557372.1	SEL1L-004	594	163aa	ENSP00000451144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3B3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554293.1	SEL1L-006	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555923.1	SEL1L-005	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554744.1	SEL1L-007	602	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,631 bps, Translation length: 301 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UBV2

CCDS

This transcript is a member of the Human CCDS set: CCDS58333

Version

ENST00000555824.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000413329 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000555824.1 SEL1L-003

Summary