Transcript: ENST00000534320.1 PHRF1-004

Description

PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:24351]

Gene Synonyms

KIAA1542, RNF221

Location

Chromosome 11: 576,486-612,043 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 29 domains and features, is associated with 22574 variant alleles and maps to 645 oligo probes.

Gene

This transcript is a product of gene ENSG00000070047.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000416188.2	PHRF1-008	5227	1648aa	ENSP00000410626.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44507	Q9P1Y6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264555.5	PHRF1-001	5523	1649aa	ENSP00000264555.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65988	Q9P1Y6	NM_020901.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413872.2	PHRF1-007	5224	1647aa	ENSP00000388589.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65989	F8WEF5	NM_001286582.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533464.1	PHRF1-003	5218	1645aa	ENSP00000431870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65987	E9PJ24	NM_001286583.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534320.1	PHRF1-004	5178	1494aa	ENSP00000435360.1	Nonsense mediated decay		Q9P1Y6	-	-
ENST00000532550.1	PHRF1-005	748	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 15, Transcript length: 5,178 bps, Translation length: 1,494 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P1Y6

Version

ENST00000534320.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000382132 (version 1)

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Transcript: ENST00000534320.1 PHRF1-004

Summary