Transcript: ENST00000321358.7 YBX1-001

Description

Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Gene Synonyms

BP-8, CSDA2, CSDB, DBPB, MDR-NF1, NSEP-1, NSEP1, YB-1, YB1

Location

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 9749 variant alleles and maps to 598 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000321358.7	YBX1-001	1514	324aa	ENSP00000361626.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS470	A0JLU4 P67809	NM_004559.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436427.1	YBX1-002	1524	374aa	ENSP00000389639.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0JLU4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000332220.6	YBX1-004	776	216aa	ENSP00000405937.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5V9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000467957.1	YBX1-003	770	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,514 bps, Translation length: 324 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P67809

CCDS

This transcript is a member of the Human CCDS set: CCDS470

Version

ENST00000321358.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000019786 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.