Description
high mobility group 20B [Source:HGNC Symbol;Acc:5002]
Gene Synonyms
BRAF25, BRAF35, HMGX2, HMGXB2, PP7706, SMARCE1R, SMARCE1r, SOXL, pp8857
Location
Chromosome 19: 3,572,977-3,576,600 forward strand.
About this transcript
This transcript has 7 exons, is annotated with 1 domain and feature, is associated with 2546 variant alleles and maps to 187 oligo probes.
Gene
This transcript is a product of gene ENSG00000064961.14 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000333651.6 | HMG20B-001 | 1596 | 317aa | ENSP00000328269.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45919 | C9J8X5 C9JQA7 Q9P0W2 | NM_006339.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000262949.7 | HMG20B-011 | 886 | 286aa | ENSP00000262949.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B5MDG7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000453933.1 | HMG20B-007 | 759 | 142aa | ENSP00000402877.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JQA7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000585900.1 | HMG20B-018 | 741 | 184aa | ENSP00000465293.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EJR8 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000416526.1 | HMG20B-005 | 711 | 215aa | ENSP00000410924.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J8X5 C9JQA7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000417382.1 | HMG20B-013 | 561 | 165aa | ENSP00000393904.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9K049 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000435022.1 | HMG20B-012 | 616 | 125aa | ENSP00000393481.1 | Nonsense mediated decay | F8WES5 | - | - | |
| ENST00000585741.1 | HMG20B-017 | 363 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000488973.2 | HMG20B-002 | 2434 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000487894.1 | HMG20B-003 | 1242 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000464304.1 | HMG20B-009 | 881 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000493191.1 | HMG20B-010 | 852 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000470356.1 | HMG20B-006 | 806 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000486028.1 | HMG20B-004 | 719 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461099.1 | HMG20B-014 | 687 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000483417.1 | HMG20B-008 | 580 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |