Transcript: ENST00000341360.2 ATP2B4-002

Description

ATPase, Ca++ transporting, plasma membrane 4 [Source:HGNC Symbol;Acc:817]

Gene Synonyms

ATP2B2, MXRA1, PMCA4, PMCA4b, PMCA4x

Location

Chromosome 1: 203,651,937-203,709,447 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 41 domains and features, is associated with 24519 variant alleles and maps to 646 oligo probes.

Gene

This transcript is a product of gene ENSG00000058668.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357681.5	ATP2B4-001	8968	1205aa	ENSP00000350310.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1440	A1X4Q2 P23634	NM_001684.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367218.3	ATP2B4-201	8905	1170aa	ENSP00000356187.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30977	A1X4Q2 P23634	NM_001001396.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367219.3	ATP2B4-202	8869	1158aa	ENSP00000356188.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P23634	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391954.2	ATP2B4-203	8797	1134aa	ENSP00000375816.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1X4Q2 P23634	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341360.2	ATP2B4-002	4658	1170aa	ENSP00000340930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30977	A1X4Q2 P23634	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356729.5	ATP2B4-006	613	129aa	ENSP00000349165.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000458092.1	ATP2B4-004	429	117aa	ENSP00000391150.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000484746.1	ATP2B4-003	4697	102aa	ENSP00000433577.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466407.1	ATP2B4-005	388	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 4,658 bps, Translation length: 1,170 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P23634

CCDS

This transcript is a member of the Human CCDS set: CCDS30977

Version

ENST00000341360.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000087463 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000341360.2 ATP2B4-002

Summary