Transcript: ENST00000556553.1 SPATA7-001

Description

spermatogenesis associated 7 [Source:HGNC Symbol;Acc:20423]

Gene Synonyms

HEL-S-296, HSD-3.1, HSD3, LCA3

Location

Chromosome 14: 88,851,268-88,904,804 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 6 domains and features, is associated with 22024 variant alleles and maps to 522 oligo probes.

Gene

This transcript is a product of gene ENSG00000042317.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393545.4	SPATA7-002	2123	599aa	ENSP00000377176.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9883	Q9P0W8	NM_018418.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556553.1	SPATA7-001	2301	567aa	ENSP00000451128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32132	Q9P0W8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356583.5	SPATA7-201	1915	567aa	ENSP00000348991.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32132	Q9P0W8	NM_001040428.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000045347.7	SPATA7-004	1410	458aa	ENSP00000045347.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9P0W8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553885.1	SPATA7-015	805	228aa	ENSP00000450606.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2E1 G3V5V8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556406.1	SPATA7-021	758	91aa	ENSP00000450809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000555401.1	SPATA7-014	545	138aa	ENSP00000452435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5N2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554802.1	SPATA7-020	401	76aa	ENSP00000451019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJ93	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000555515.1	SPATA7-013	1088	81aa	ENSP00000450882.1	Nonsense mediated decay		G3V2V4	-	-
ENST00000555534.1	SPATA7-008	890	85aa	ENSP00000450515.1	Nonsense mediated decay		G3V287	-	-
ENST00000557248.1	SPATA7-017	804	86aa	ENSP00000451690.1	Nonsense mediated decay		G3V4A9	-	-
ENST00000556870.1	SPATA7-007	786	53aa	ENSP00000452359.1	Nonsense mediated decay		G3V5H6	-	-
ENST00000553908.1	SPATA7-018	761	49aa	ENSP00000452546.1	Nonsense mediated decay		G3V5V8	-	-
ENST00000554168.1	SPATA7-006	651	46aa	ENSP00000451663.1	Nonsense mediated decay		G3V491	-	-
ENST00000555356.1	SPATA7-010	592	46aa	ENSP00000450654.1	Nonsense mediated decay		G3V491	-	-
ENST00000557724.1	SPATA7-009	568	46aa	ENSP00000452364.1	Nonsense mediated decay		G3V491	-	-
ENST00000555715.1	SPATA7-011	545	42aa	ENSP00000451181.1	Nonsense mediated decay		G3V3D2	-	-
ENST00000554102.1	SPATA7-012	501	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553626.1	SPATA7-003	3610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556666.1	SPATA7-005	2380	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553303.1	SPATA7-019	885	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557567.1	SPATA7-016	457	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,301 bps, Translation length: 567 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P0W8

CCDS

This transcript is a member of the Human CCDS set: CCDS32132

Version

ENST00000556553.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410171 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000556553.1 SPATA7-001

Summary