Transcript: ENST00000471098.1 TBC1D23-006

Description

TBC1 domain family, member 23 [Source:HGNC Symbol;Acc:25622]

Gene Synonyms

FLJ11046, NS4ATP1

Location

Chromosome 3: 99,986,036-100,009,500 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 9405 variant alleles and maps to 101 oligo probes.

Gene

This transcript is a product of gene ENSG00000036054.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394144.4	TBC1D23-002	3677	699aa	ENSP00000377700.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56265	B3KS68 Q9NUY8	NM_001199198.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344949.5	TBC1D23-001	3656	684aa	ENSP00000340693.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2936	B3KS68 Q9NUY8	NM_018309.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475134.1	TBC1D23-004	2074	562aa	ENSP00000418059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KS68 E9PGE5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485687.1	TBC1D23-008	587	189aa	ENSP00000417487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAM5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471098.1	TBC1D23-006	559	171aa	ENSP00000418714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZ32	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000486274.1	TBC1D23-005	4054	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471273.1	TBC1D23-003	2304	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496167.1	TBC1D23-009	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484231.1	TBC1D23-007	662	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 559 bps, Translation length: 171 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000471098.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000353154 (version 1)

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Transcript: ENST00000471098.1 TBC1D23-006

Summary