Transcript: ENST00000519166.1 NSMAF-009

Description

neutral sphingomyelinase (N-SMase) activation associated factor [Source:HGNC Symbol;Acc:8017]

Gene Synonyms

FAN

Location

Chromosome 8: 59,502,081-59,506,859 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2120 variant alleles and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSG00000035681.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000427130.2	NSMAF-002	3371	948aa	ENSP00000411012.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47864	Q92636	NM_001144772.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000038176.3	NSMAF-001	3569	917aa	ENSP00000038176.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6173	Q92636	NM_003580.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518159.1	NSMAF-003	582	54aa	ENSP00000430982.1	Nonsense mediated decay		E5RGU2	-	-
ENST00000518229.1	NSMAF-004	581	65aa	ENSP00000430195.1	Nonsense mediated decay		E5RGF5	-	-
ENST00000519858.1	NSMAF-012	936	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523177.1	NSMAF-013	575	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523982.1	NSMAF-016	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521972.1	NSMAF-011	862	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523106.1	NSMAF-007	757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519166.1	NSMAF-009	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000517612.1	NSMAF-010	679	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524148.1	NSMAF-008	591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519174.1	NSMAF-014	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519227.1	NSMAF-006	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522645.1	NSMAF-005	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521712.1	NSMAF-015	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519871.1	NSMAF-017	413	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 690 bps,

Version

ENST00000519166.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000378390 (version 1)

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Transcript: ENST00000519166.1 NSMAF-009

Summary