Transcript: ENST00000553803.1 NRXN3-014

Description

neurexin 3 [Source:HGNC Symbol;Acc:8010]

Gene Synonyms

C14orf60, KIAA0743

Location

Chromosome 14: 79,765,138-80,039,354 forward strand.

About this transcript

This transcript has 4 exons, is associated with 120277 variant alleles and maps to 32 oligo probes.

Gene

This transcript is a product of gene ENSG00000021645.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000554719.1	NRXN3-001	4156	1061aa	ENSP00000451648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9870	G3V247 G3V4R9 Q9Y4C0	NM_004796.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000281127.7	NRXN3-005	4633	432aa	ENSP00000281127.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9871	Q9HDB5	NM_138970.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428277.2	NRXN3-006	4219	459aa	ENSP00000394426.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45145	Q9HDB5	NM_001105250.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000335750.5	NRXN3-201	3649	1061aa	ENSP00000338349.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9870	G3V247 G3V4R9 Q9Y4C0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557594.1	NRXN3-004	3381	637aa	ENSP00000451672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61515	B3KTX7 Q9HDB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557081.1	NRXN3-011	551	119aa	ENSP00000450462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V247 G3V4R9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553363.1	NRXN3-010	523	175aa	ENSP00000451754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000553631.1	NRXN3-009	509	75aa	ENSP00000451947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4R9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554738.1	NRXN3-002	6446	1392aa	ENSP00000450683.1	Nonsense mediated decay		G3V247 G3V4R9 Q9Y4C0	-	-
ENST00000555387.1	NRXN3-007	3211	398aa	ENSP00000451393.1	Nonsense mediated decay		Q9HDB5	-	-
ENST00000556003.1	NRXN3-013	750	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553803.1	NRXN3-014	530	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555073.1	NRXN3-012	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556496.1	NRXN3-003	2737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556088.1	NRXN3-008	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 530 bps,

Version

ENST00000553803.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000413795 (version 1)

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Transcript: ENST00000553803.1 NRXN3-014

Summary