Transcript: ENST00000512331.1 RUFY3-016

Description

RUN and FYVE domain containing 3 [Source:HGNC Symbol;Acc:30285]

Gene Synonyms

KIAA0871, RIPX, RIPx, SINGAR1, Singar1

Location

Chromosome 4: 71,665,122-71,672,465 forward strand.

About this transcript

This transcript has 5 exons, is associated with 2995 variant alleles and maps to 301 oligo probes.

Gene

This transcript is a product of gene ENSG00000018189.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381006.3	RUFY3-002	3098	620aa	ENSP00000370394.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34001	D6RCQ1 D6REM9 Q7L099	NM_001037442.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000226328.4	RUFY3-001	4233	469aa	ENSP00000226328.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3547	D6RCQ1 D6REM9 Q7L099	NM_014961.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502653.1	RUFY3-003	2342	567aa	ENSP00000425400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCQ1 D6REM9 Q7L099	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417478.2	RUFY3-005	2143	506aa	ENSP00000399771.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47068	D6RCQ1 D6REM9 D6RH24 Q7L099	NM_001130709.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536664.1	RUFY3-201	1421	453aa	ENSP00000443652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DKC2 D6RCQ1 D6REM9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513597.1	RUFY3-004	867	201aa	ENSP00000425574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCQ1 D6REM9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503876.1	RUFY3-007	531	155aa	ENSP00000426734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REM9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514898.1	RUFY3-008	482	98aa	ENSP00000426165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RH24	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512103.1	RUFY3-012	582	57aa	ENSP00000420980.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000504805.2	RUFY3-009	562	145aa	ENSP00000421120.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512331.1	RUFY3-016	866	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507333.1	RUFY3-015	495	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000515442.1	RUFY3-014	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513593.1	RUFY3-013	356	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000515479.1	RUFY3-011	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503025.1	RUFY3-010	436	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 866 bps,

Version

ENST00000512331.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362602 (version 1)

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Transcript: ENST00000512331.1 RUFY3-016

Summary