Transcript: ENST00000602503.1 KDM1A-006

Description

lysine (K)-specific demethylase 1A [Source:HGNC Symbol;Acc:29079]

Gene Synonyms

AOF2, BHC110, KDM1, KIAA0601, LSD1

Location

Chromosome 1: 23,407,366-23,410,175 forward strand.

About this transcript

This transcript has 1 exon, is associated with 1264 variant alleles and maps to 199 oligo probes.

Gene

This transcript is a product of gene ENSG00000004487.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000400181.4	KDM1A-002	3059	876aa	ENSP00000383042.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53278	O60341	NM_001009999.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542151.1	KDM1A-201	3058	876aa	ENSP00000439072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6S0T5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356634.3	KDM1A-001	3033	852aa	ENSP00000349049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30627	O60341	NM_015013.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000494920.1	KDM1A-004	905	301aa	ENSP00000473294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GMP9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000465864.1	KDM1A-005	568	189aa	ENSP00000473297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GMQ1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000602503.1	KDM1A-006	2810	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481879.1	KDM1A-003	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 2,810 bps,

Version

ENST00000602503.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000467521 (version 1)

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Transcript: ENST00000602503.1 KDM1A-006

Summary