Description
vacuolar protein sorting 13 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:1908]
Gene Synonyms
CHAC, CHOREIN, KIAA0986
Location
Chromosome 9: 79,792,269-80,036,457 forward strand.
GRCh37:CM000671.1
About this gene
This gene has 13 transcripts (splice variants), 3 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000360280.3 | VPS13A-005 | 15320 | 3174aa | ENSP00000353422.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6655 | Q96RL7 | NM_033305.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000376636.3 | VPS13A-010 | 11145 | 3135aa | ENSP00000365823.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55321 | Q96RL7 | NM_001018037.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000376634.4 | VPS13A-001 | 10269 | 3069aa | ENSP00000365821.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47983 | Q96RL7 | NM_001018038.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000357409.5 | VPS13A-006 | 9967 | 3095aa | ENSP00000349985.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6656 | Q96RL7 | NM_015186.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000419472.1 | VPS13A-002 | 2781 | 383aa | ENSP00000414410.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000376646.3 | VPS13A-009 | 2262 | 110aa | ENSP00000365834.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000484581.2 | VPS13A-004 | 1155 | 110aa | ENSP00000446020.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000467124.1 | VPS13A-003 | 324 | 41aa | ENSP00000441840.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000493341.1 | VPS13A-007 | 2001 | 177aa | ENSP00000437478.1 | Nonsense mediated decay | H0YF78 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000423463.2 | VPS13A-011 | 2702 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000471439.1 | VPS13A-008 | 510 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000355766.5 | VPS13A-014 | 753 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000539950.1 | VPS13A-013 | 390 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
