Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]
Gene Synonyms
CO11A1, COLL6, STL2
Location
Chromosome 1: 103,342,023-103,574,052 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 10 transcripts (splice variants), 17 paralogues and is associated with 14 phenotypes.
Transcripts
Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|---|
ENST00000358392.2 | COL11A1-202 | 7327 | 1818aa | ENSP00000351163.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DQZ0 C9JMN2 P12107 | NM_080629.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
ENST00000370096.3 | COL11A1-001 | 7286 | 1806aa | ENSP00000359114.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS778 | B4DQZ0 P12107 Q4FAC4 | NM_001854.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000353414.4 | COL11A1-201 | 7174 | 1767aa | ENSP00000302551.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS53348 | B4DQZ0 P12107 | NM_001190709.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000512756.1 | COL11A1-008 | 5442 | 1690aa | ENSP00000426533.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS780 | B4DQZ0 P12107 Q4FAC4 | NM_080630.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000427239.1 | COL11A1-002 | 1709 | 569aa | ENSP00000408640.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JMN2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000447608.1 | COL11A1-003 | 776 | 200aa | ENSP00000410177.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C381 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000461720.1 | COL11A1-004 | 678 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000475980.1 | COL11A1-005 | 377 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000470170.1 | COL11A1-007 | 785 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000465209.1 | COL11A1-006 | 297 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |