Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:2190]
Gene Synonyms
COLXIIIA1
Location
Chromosome 10: 71,561,644-71,724,031 forward strand.
GRCh37:CM000672.1
About this gene
This gene has 22 transcripts (splice variants), 9 paralogues and is associated with 4 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000398978.3 | COL13A1-001 | 3093 | 717aa | ENSP00000381949.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44419 | Q5TAT6 Q9UP45 | NM_001130103.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000356340.3 | COL13A1-201 | 3136 | 717aa | ENSP00000348695.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G5E987 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398974.3 | COL13A1-209 | 3101 | 705aa | ENSP00000381946.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES46 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398972.3 | COL13A1-207 | 3094 | 703aa | ENSP00000381944.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES47 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398971.3 | COL13A1-206 | 3092 | 702aa | ENSP00000381943.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES49 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398968.3 | COL13A1-204 | 3080 | 698aa | ENSP00000381940.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES51 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398966.3 | COL13A1-203 | 3071 | 695aa | ENSP00000381938.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES55 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398973.3 | COL13A1-208 | 3058 | 691aa | ENSP00000381945.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PEG9 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398964.3 | COL13A1-202 | 3050 | 688aa | ENSP00000381936.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES56 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000354547.3 | COL13A1-002 | 3027 | 695aa | ENSP00000346553.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44424 | Q5TAT6 Q9UP45 | NM_080801.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000357811.3 | COL13A1-004 | 2991 | 683aa | ENSP00000350463.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5TAT6 Q9UP45 | NM_080802.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398969.3 | COL13A1-205 | 2921 | 645aa | ENSP00000381941.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES50 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000520267.1 | COL13A1-011 | 2276 | 645aa | ENSP00000428057.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44427 | Q5TAT6 Q9UP45 | NM_080798.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000522165.1 | COL13A1-014 | 2061 | 686aa | ENSP00000428342.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44425 | Q5TAT6 Q9UP45 | NM_080800.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000517713.1 | COL13A1-013 | 2007 | 668aa | ENSP00000430061.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44423 | Q5TAT6 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000520133.1 | COL13A1-015 | 1833 | 610aa | ENSP00000430173.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44428 | Q5TAT6 Q9UP45 | NM_080805.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000398975.2 | COL13A1-006 | 1057 | 247aa | ENSP00000381947.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000456019.1 | COL13A1-008 | 749 | 174aa | ENSP00000388774.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000479733.1 | COL13A1-003 | 2934 | 582aa | ENSP00000430089.1 | Nonsense mediated decay | E7EX21 Q9UP45 | - | - | |
| ENST00000484990.1 | COL13A1-007 | 360 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000518052.1 | COL13A1-012 | 290 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000478219.1 | COL13A1-009 | 2586 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
