Gene: COL27A1 ENSG00000196739

Description

collagen, type XXVII, alpha 1 [Source:HGNC Symbol;Acc:22986]

Gene Synonyms

FLJ11895, KIAA1870, MGC11337

Location

Chromosome 9: 116,917,840-117,074,791 forward strand.

GRCh37:CM000671.1

About this gene

This gene has 8 transcripts (splice variants), 17 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356083.3	COL27A1-001	7790	1860aa	ENSP00000348385.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6802	Q8IZC6	NM_032888.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451716.1	COL27A1-004	2865	714aa	ENSP00000391328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T1U7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494090.2	COL27A1-002	5329	485aa	ENSP00000432928.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477421.2	COL27A1-006	3991	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468565.1	COL27A1-003	1946	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490831.1	COL27A1-008	666	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494780.1	COL27A1-007	514	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485397.1	COL27A1-005	463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

EMBL-EBI User Survey 2024

Gene: COL27A1 ENSG00000196739

Summary

EMBL-EBI User Survey 2024

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Gene: COL27A1 ENSG00000196739

Summary